FEMS Yeast Research, 19: foz058.

The Methylotroph Gene Order Browser (MGOB) reveals conserved synteny and ancestral centromere locations in the yeast family Pichiaceae

Douglass AP, Byrne KP and Wolfe KH (2019)

Scientific Reports, 9: 9240.

The CYPome of the model xenobiotic-biotransforming fungus Cunninghamella elegans

Palmer-Brown W, Miranda-CasoLuengo R, Wolfe KH, Byrne KP and Murphy CD (2019)

G3, 9: 879-887.

Coverage-versus-Length plots, a simple quality control step for de novo yeast genome sequence assemblies

Douglass AP, O'Brien CE, Offei B, Coughlan AY, Ortiz-Merino RA, Butler G, Byrne KP and Wolfe KH (2019)

Genome Biology and Evolution, 11: 189-206.

Comparative analysis of Oomycete genome evolution using the Oomycete Gene Order Browser (OGOB)

McGowan J, Byrne KP and Fitzpatrick DA (2019)

PLOS Pathogens, 14: e1007138.

Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names

Douglass AP, Offei B, Braun-Galleani S, Coughlan AY, Martos AAR, Ortiz-Merino RA, Byrne KP and Wolfe KH (2018)

Genome Announcements, 6: e00549-18.

Draft genome sequence of the yeast Nadsonia starkeyi-henricii UCD142, isolated from forest soil in Ireland

O'Boyle S, Bergin SA, Hussey ÉE, McLaughlin AD, Riddell LR, Byrne KP, Wolfe KH, O'Brien CE and Butler G (2018)

Applied and Environmental Microbiology, 84: e02294-17.

Transcriptional response to lactic acid stress in the hybrid yeast Zygosaccharomyces parabailii

Ortiz-Merino RA, Kuanyshev N, Byrne KP, Varela JA, Morrissey JP, Porro D, Wolfe KH and Branduardi P (2018)

PLOS Genetics, 13: e1007092.

Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway

Hanson SJ, Byrne KP and Wolfe KH (2017)

PLOS Biology, 15: e2002128.

Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch

Ortiz-Merino RA, Kuanyshev N, Braun-Galleani S, Byrne KP, Porro D, Branduardi P and Wolfe KH (2017)

Genome Biology and Evolution, 8: 2482-92.

Centromeres of the yeast Komagataella phaffii (Pichia pastoris) have a simple inverted-repeat structure

Coughlan AY, Hanson SJ, Byrne KP and Wolfe KH (2016)

FEMS Yeast Research, 15: fov035.

Clade- and species-specific features of genome evolution in the Saccharomycetaceae

Wolfe KH, Armisén D, Proux-Wera E, ÓhÉigeartaigh SS, Azam H, Gordon JL and Byrne KP (2015)

PNAS, 111: E4851-8.

Mating type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system

Hanson SJ, Byrne KP and Wolfe KH (2014)

Journal of Bacteriology, 196: 2030-2042.

SearchDOGS Bacteria, software that provides automated identification of potentially missed genes in annotated bacterial genomes

ÓhÉigeartaigh SS, Armisén D, Byrne KP and Wolfe KH (2014)

Molecular Biology and Evolution, 30: 1281-1291.

Comparative genome analysis and gene finding in Candida species using CGOB

Maguire S, ÓhÉigeartaigh SS, Byrne KP, Schroeder M, O'Gaora P, Wolfe KH and Butler G (2013)

Genome Biology and Evolution, 5: 525-531.

Evolutionary mobility of the ribosomal DNA array in yeasts

Proux-Wéra E, Byrne KP and Wolfe KH (2013)

Party Politics, 19: 985-997.

What's in a name? Using surnames as data for party research

Kevin Byrne and Eoin O'Malley (2013)

Irish Political Studies, 28: 130-139.

The two types of Ulster unionism: Testing an ethnic explanation for the unionist/loyalist divide

Kevin Byrne and Eoin O'Malley (2013)

BMC Bioinformatics, 13: 237.

A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach

Proux-Wéra E, Armisén D, Byrne KP and Wolfe KH (2012)

British Journal of Politics and International Relations, 14: 613-629.

Politics with Hidden Bases: Unearthing the deep roots of party systems

Kevin Byrne and Eoin O'Malley (2012)

PNAS, 108: 20024-20029.

Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents

Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP and Wolfe KH (2011)

PLOS Genetics, 7: e1002190.

Mechanisms of chromosome number evolution in yeast

Gordon JL, Byrne KP and Wolfe KH (2011)

BMC Genomics, 12: 377.

Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments

OhEigeartaigh SS, Armisen D, Byrne KP and Wolfe KH (2011)

BMC Genomics, 11: 290.

Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser

Fitzpatrick DA, O'Gaora P, Byrne KP and Butler G (2010)

PLOS Genetics, 5: e1000485.

Additions, losses and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome

Gordon JL, Byrne KP and Wolfe KH (2009)

PNAS, 104: 8397-8402.

Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M and Wolfe KH (2007)

Genetics, 175: 1341-1350.

Consistent patterns of rate asymmetry and gene loss indicate widespread neo-functionalization of yeast genes after whole-genome duplication

Byrne KP and Wolfe KH (2007)

Nature, 440: 341-345.

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

Scannell DR*, Byrne KP*, Gordon JL, Wong S and Wolfe KH (2006)

* These authors contributed equally to this work.

Nucleic Acids Research, 34: D452-455.

Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser

Byrne KP and Wolfe KH (2006)

Molecular Biology and Evolution, 23: 245-253.

Rate asymmetry and adaptive evolution after genome duplication causes substantial long branch attraction artifacts in the phylogeny of Saccharomyces species

Fares MA, Byrne KP and Wolfe KH (2006)

Current Bioinformatics, 1: 131-146.

Computational analyses of ancient polyploidy

Byrne KP and Blanc G (2006)

Genome Research, 15: 1456-1461.

The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species

Byrne KP and Wolfe KH (2005)

Fifth Workshop on QCD, 346-353

The spin dependence of swift proton collisions

AT Bates, NH Buttimore and KP Byrne (2000)